{"id":2115,"date":"2019-10-02T14:38:57","date_gmt":"2019-10-02T05:38:57","guid":{"rendered":"https:\/\/plaza.umin.ac.jp\/~OIO\/?p=2115"},"modified":"2019-10-02T14:38:57","modified_gmt":"2019-10-02T05:38:57","slug":"bioconductor%e3%81%ae%e3%82%a4%e3%83%b3%e3%82%b9%e3%83%88%e3%83%bc%e3%83%ab","status":"publish","type":"post","link":"https:\/\/plaza.umin.ac.jp\/~OIO\/?p=2115","title":{"rendered":"BioConductor\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb"},"content":{"rendered":"

\u4ee5\u524d\u306e\u65b9\u6cd5\u3058\u3083\u30c0\u30e1\u3058\u3083\u3093<\/h1>\n

R\u3092\u30a2\u30c3\u30d7\u30c7\u30fc\u30c8\u3057\u305f\u3089Bioconductor\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u3082\u5fc5\u8981\u306b\u306a\u3063\u305f\u306e\u3067\u3059\u304c\u3001<\/p>\n

> source(“http:\/\/bioconductor.org\/biocLite.R”)
\n> bioLite()<\/p><\/blockquote>\n

\u3067\u306f\u30c0\u30e1\u306b\u306a\u3063\u3066\u3044\u307e\u3057\u305f\u306e\u3067\u8abf\u3079\u307e\u3057\u305f\u3002\u30a8\u30e9\u30fc\u30e1\u30c3\u30bb\u30fc\u30b8\u3067\u306fR versin 3.5\u304b\u3089\u306fbioLite\u3067\u306f\u306a\u304f\u3001BiocManager\u3092\u4f7f\u7528\u3059\u308b\u3088\u3046\u306b\u3068\u306a\u3063\u3066\u3044\u307e\u3059\u3002<\/p>\n

With R version 3.5 or greater, install Bioconductor packages using BiocManager; see https:\/\/bioconductor.org\/instal<\/p><\/blockquote>\n

<\/h1>\n

\u73fe\u5728\u306e\u65b9\u6cd5<\/h1>\n

\u3068\u3044\u3046\u308f\u3051\u3067\u30db\u30fc\u30e0\u30da\u30fc\u30b8\u3067\u65b0\u3057\u3044bioconductor\u306e\u5c0e\u5165\u65b9\u6cd5\u3092\u8abf\u3079\u3066\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u3057\u307e\u3057\u305f\u3002\u6b21\u306e\u3088\u3046\u306b\u306a\u308a\u307e\u3057\u305f\u3002<\/p>\n

\n

> if (!requireNamespace(“BiocManager”, quietly = TRUE))\u00a0 install.packages(“BiocManager”)<\/span>
\n\u30d1\u30c3\u30b1\u30fc\u30b8\u3092 \u2018C:\/Users\/ganken-0309\/Documents\/R\/win-library\/3.6\u2019 \u4e2d\u306b\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u3057\u307e\u3059
\n(\u2018lib\u2019 \u304c\u6307\u5b9a\u3055\u308c\u3066\u3044\u306a\u3044\u305f\u3081)
\nURL ‘https:\/\/cloud.r-project.org\/bin\/windows\/contrib\/3.6\/BiocManager_1.30.4.zip’ \u3092\u8a66\u3057\u3066\u3044\u307e\u3059
\nContent type ‘application\/zip’ length 292998 bytes (286 KB)
\ndownloaded 286 KB<\/p>\n

\u30d1\u30c3\u30b1\u30fc\u30b8 \u2018BiocManager\u2019 \u306f\u7121\u4e8b\u306b\u5c55\u958b\u3055\u308c\u3001MD5 \u30b5\u30e0\u3082\u30c1\u30a7\u30c3\u30af\u3055\u308c\u307e\u3057\u305f<\/p>\n

\u30c0\u30a6\u30f3\u30ed\u30fc\u30c9\u3055\u308c\u305f\u30d1\u30c3\u30b1\u30fc\u30b8\u306f\u3001\u4ee5\u4e0b\u306b\u3042\u308a\u307e\u3059
\nC:\\Users\\ganken-0309\\AppData\\Local\\Temp\\RtmpymGsiN\\downloaded_packages<\/p>\n

> BiocManager::install(“LBE”)<\/span>
\nBioconductor version 3.9 (BiocManager 1.30.4), R 3.6.1 (2019-07-05)
\nInstalling package(s) ‘LBE’
\nURL ‘https:\/\/bioconductor.org\/packages\/3.9\/bioc\/bin\/windows\/contrib\/3.6\/LBE_1.52.0.zip’ \u3092\u8a66\u3057\u3066\u3044\u307e\u3059
\nContent type ‘application\/zip’ length 452641 bytes (442 KB)
\ndownloaded 442 KB<\/p>\n

package \u2018LBE\u2019 successfully unpacked and MD5 sums checked<\/p>\n

The downloaded binary packages are in
\nC:\\Users\\ganken-0309\\AppData\\Local\\Temp\\RtmpymGsiN\\downloaded_packages
\ninstallation path not writeable, unable to update packages: boot, foreign, mgcv, nlme<\/p><\/blockquote>\n","protected":false},"excerpt":{"rendered":"

\u4ee5\u524d\u306e\u65b9\u6cd5\u3058\u3083\u30c0\u30e1\u3058\u3083\u3093 R\u3092\u30a2\u30c3\u30d7\u30c7\u30fc\u30c8\u3057\u305f\u3089Bioconductor\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u3082\u5fc5\u8981\u306b\u306a\u3063\u305f\u306e\u3067\u3059\u304c\u3001 > source(“http:\/\/bioconductor.org\/biocLite.R&…<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_jetpack_memberships_contains_paid_content":false,"footnotes":""},"categories":[5],"tags":[],"class_list":["post-2115","post","type-post","status-publish","format-standard","hentry","category-miscellaneous"],"jetpack_featured_media_url":"","jetpack_shortlink":"https:\/\/wp.me\/p9b6zl-y7","jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/plaza.umin.ac.jp\/~OIO\/index.php?rest_route=\/wp\/v2\/posts\/2115","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/plaza.umin.ac.jp\/~OIO\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/plaza.umin.ac.jp\/~OIO\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/plaza.umin.ac.jp\/~OIO\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/plaza.umin.ac.jp\/~OIO\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2115"}],"version-history":[{"count":0,"href":"https:\/\/plaza.umin.ac.jp\/~OIO\/index.php?rest_route=\/wp\/v2\/posts\/2115\/revisions"}],"wp:attachment":[{"href":"https:\/\/plaza.umin.ac.jp\/~OIO\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2115"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/plaza.umin.ac.jp\/~OIO\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=2115"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/plaza.umin.ac.jp\/~OIO\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2115"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}