{"id":239,"date":"2020-11-02T21:15:15","date_gmt":"2020-11-02T21:15:15","guid":{"rendered":"https:\/\/plaza.umin.ac.jp\/shoei05\/wp\/?p=239"},"modified":"2021-02-21T02:31:11","modified_gmt":"2021-02-21T02:31:11","slug":"%e3%82%b5%e3%83%96%e3%83%87%e3%82%a3%e3%83%ac%e3%82%af%e3%83%88%e3%83%aa%e3%81%a7%e7%ae%a1%e7%90%86%e3%81%97%e3%81%a6%e3%81%84%e3%82%8b-rmarkdown-%e3%81%ae%e3%83%87%e3%83%95%e3%82%a9%e3%83%ab%e3%83%88","status":"publish","type":"post","link":"https:\/\/plaza.umin.ac.jp\/shoei05\/index.php\/2020\/11\/02\/239\/","title":{"rendered":"\u30b5\u30d6\u30c7\u30a3\u30ec\u30af\u30c8\u30ea\u3067\u7ba1\u7406\u3057\u3066\u3044\u308b Rmarkdown \u306e\u30c7\u30d5\u30a9\u30eb\u30c8\u30d1\u30b9\u3092\u8a2d\u5b9a\u3059\u308b"},"content":{"rendered":"\n<div id=\"ez-toc-container\" class=\"ez-toc-v2_0_76 ez-toc-wrap-left counter-hierarchy ez-toc-counter ez-toc-grey ez-toc-container-direction\">\n<div class=\"ez-toc-title-container\">\n<p class=\"ez-toc-title\" style=\"cursor:inherit\">Table of Contents<\/p>\n<span class=\"ez-toc-title-toggle\"><a href=\"#\" class=\"ez-toc-pull-right ez-toc-btn ez-toc-btn-xs ez-toc-btn-default ez-toc-toggle\" aria-label=\"Toggle Table of Content\"><span class=\"ez-toc-js-icon-con\"><span class=\"\"><span class=\"eztoc-hide\" style=\"display:none;\">Toggle<\/span><span class=\"ez-toc-icon-toggle-span\"><svg style=\"fill: #999;color:#999\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\" class=\"list-377408\" width=\"20px\" height=\"20px\" viewBox=\"0 0 24 24\" fill=\"none\"><path d=\"M6 6H4v2h2V6zm14 0H8v2h12V6zM4 11h2v2H4v-2zm16 0H8v2h12v-2zM4 16h2v2H4v-2zm16 0H8v2h12v-2z\" fill=\"currentColor\"><\/path><\/svg><svg style=\"fill: #999;color:#999\" class=\"arrow-unsorted-368013\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\" width=\"10px\" height=\"10px\" viewBox=\"0 0 24 24\" version=\"1.2\" baseProfile=\"tiny\"><path d=\"M18.2 9.3l-6.2-6.3-6.2 6.3c-.2.2-.3.4-.3.7s.1.5.3.7c.2.2.4.3.7.3h11c.3 0 .5-.1.7-.3.2-.2.3-.5.3-.7s-.1-.5-.3-.7zM5.8 14.7l6.2 6.3 6.2-6.3c.2-.2.3-.5.3-.7s-.1-.5-.3-.7c-.2-.2-.4-.3-.7-.3h-11c-.3 0-.5.1-.7.3-.2.2-.3.5-.3.7s.1.5.3.7z\"\/><\/svg><\/span><\/span><\/span><\/a><\/span><\/div>\n<nav><ul class='ez-toc-list ez-toc-list-level-1 ' ><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-1\" href=\"https:\/\/plaza.umin.ac.jp\/shoei05\/index.php\/2020\/11\/02\/239\/#Rmarkdown%E3%81%AE%E3%83%87%E3%83%95%E3%82%A9%E3%83%AB%E3%83%88%E3%83%91%E3%82%B9%E3%81%AB%E3%81%A4%E3%81%84%E3%81%A6\" >Rmarkdown\u306e\u30c7\u30d5\u30a9\u30eb\u30c8\u30d1\u30b9\u306b\u3064\u3044\u3066<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-2\" href=\"https:\/\/plaza.umin.ac.jp\/shoei05\/index.php\/2020\/11\/02\/239\/#%E8%A7%A3%E6%B1%BA%E6%B3%95\" >\u89e3\u6c7a\u6cd5<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-3\" href=\"https:\/\/plaza.umin.ac.jp\/shoei05\/index.php\/2020\/11\/02\/239\/#%E8%A3%9C%E8%B6%B3\" >\u88dc\u8db3<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-4\" href=\"https:\/\/plaza.umin.ac.jp\/shoei05\/index.php\/2020\/11\/02\/239\/#%E5%8F%82%E8%80%83\" >\u53c2\u8003<\/a><\/li><\/ul><\/nav><\/div>\n<h2 class=\"wp-block-heading\"><span class=\"ez-toc-section\" id=\"Rmarkdown%E3%81%AE%E3%83%87%E3%83%95%E3%82%A9%E3%83%AB%E3%83%88%E3%83%91%E3%82%B9%E3%81%AB%E3%81%A4%E3%81%84%E3%81%A6\"><\/span>Rmarkdown\u306e\u30c7\u30d5\u30a9\u30eb\u30c8\u30d1\u30b9\u306b\u3064\u3044\u3066<span class=\"ez-toc-section-end\"><\/span><\/h2>\n\n\n\n<p>Rmarkdown (.Rmd)\u30d5\u30a1\u30a4\u30eb\u3092\u30b5\u30d6\u30c7\u30a3\u30ec\u30af\u30c8\u30ea\u3067\u7ba1\u7406\u3057\u3066\u3044\u308b\u3068\u3001\u5916\u90e8\u30d5\u30a1\u30a4\u30eb\u3078\u306e\u30d1\u30b9\u6307\u5b9a\u3067\u6238\u60d1\u3046\u3053\u3068\u304c\u3042\u308a\u307e\u3059\u3002\u30c7\u30d5\u30a9\u30eb\u30c8\u3067\u306f\u3001<strong>R\u30c1\u30e3\u30f3\u30af\uff08chunk\uff09\u306e\u4f5c\u696d\u30c7\u30a3\u30ec\u30af\u30c8\u30ea\u306f\u3001.Rmd\u30d5\u30a1\u30a4\u30eb\u306e\u3042\u308b\u30c7\u30a3\u30ec\u30af\u30c8\u30ea<\/strong>\u306b\u306a\u308a\u307e\u3059\u3002\u3064\u307e\u308a\u3001<strong>\u30c1\u30e3\u30f3\u30af\u5185\u3067\u5916\u90e8\u30d5\u30a1\u30a4\u30eb\u3092\u53c2\u7167\u3059\u308b\u5834\u5408\u306f\u3001.Rmd\u30d5\u30a1\u30a4\u30eb\u306e\u30c7\u30a3\u30ec\u30af\u30c8\u30ea\u306b\u5bfe\u3059\u308b\u76f8\u5bfe\u30d1\u30b9\u3067\u3042\u308b\u3053\u3068\u3092\u77e5\u3063\u3066\u304a\u304f\u5fc5\u8981\u304c\u3042\u308a\u307e\u3059\u3002<\/strong><\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><span class=\"ez-toc-section\" id=\"%E8%A7%A3%E6%B1%BA%E6%B3%95\"><\/span>\u89e3\u6c7a\u6cd5<span class=\"ez-toc-section-end\"><\/span><\/h2>\n\n\n\n<p>\u30d7\u30ed\u30b8\u30a7\u30af\u30c8(.Rproj)\u3067\u7ba1\u7406\u3057\u3066\u3044\u308b\u5834\u5408\u306f\u3001{r setup, include=FALSE}\u306bknitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())\u3092\u5165\u308c\u308b\u3068\u3001\u3059\u3079\u3066\u306e\u30c1\u30e3\u30f3\u30af\u3067\u306e\u76f8\u5bfe\u30d1\u30b9\u3092\u3001.Rproj\u304b\u3089\u306e\u76f8\u5bfe\u30d1\u30b9\u306b\u8a2d\u5b9a\u3067\u304d\u307e\u3059\u3002<\/p>\n\n\n<pre class=\"wp-block-code\" aria-describedby=\"shcb-language-1\" data-shcb-language-name=\"PHP\" data-shcb-language-slug=\"php\"><span><code class=\"hljs language-php\">```{r setup, <span class=\"hljs-keyword\">include<\/span>=<span class=\"hljs-keyword\">FALSE<\/span>}\nknitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())\n```<\/code><\/span><small class=\"shcb-language\" id=\"shcb-language-1\"><span class=\"shcb-language__label\">Code language:<\/span> <span class=\"shcb-language__name\">PHP<\/span> <span class=\"shcb-language__paren\">(<\/span><span class=\"shcb-language__slug\">php<\/span><span class=\"shcb-language__paren\">)<\/span><\/small><\/pre>\n\n\n<h2 class=\"wp-block-heading\"><span class=\"ez-toc-section\" id=\"%E8%A3%9C%E8%B6%B3\"><\/span>\u88dc\u8db3<span class=\"ez-toc-section-end\"><\/span><\/h2>\n\n\n\n<p>\u4f5c\u696d\u30c7\u30a3\u30ec\u30af\u30c8\u30ea\u3092\u5909\u66f4\u3059\u308b\u901a\u5e38\u306e\u65b9\u6cd5\u3092\u3001.Rproj\u304b\u3001R Markdown\u3067\u306f setwd() \u306f\u6c38\u7d9a\u7684\u3067\u306f\u306a\u304f\u3001\u6b21\u306e\u30c1\u30e3\u30f3\u30af\u3067\u306f\u30c7\u30d5\u30a9\u30eb\u30c8\u30d1\u30b9\u306b\u623b\u308b\u3088\u3046\u306b\u306a\u3063\u3066\u3044\u307e\u3059\u3002\u5168\u3066\u306e\u30c1\u30e3\u30f3\u30af\u306e\u4f5c\u696d\u30c7\u30a3\u30ec\u30af\u30c8\u30ea\u3092\u5909\u66f4\u3057\u305f\u3044\u5834\u5408R Markdown\u3067\u306f setwd() \u306f<\/p>\n\n\n\n<p>\u3053\u308c\u306f\u3001.html\u30d5\u30a1\u30a4\u30eb\u3068\u540c\u69d8\u306b\u3001<strong>Rmd\u30d5\u30a1\u30a4\u30eb\u304b\u3089\u306e\u76f8\u5bfe\u30d1\u30b9\u306b\u3057\u3066\u304a\u3051\u3070\u3001.Rmd\u30d5\u30a1\u30a4\u30eb\u3068\u305d\u306e\u53c2\u7167\u30d5\u30a1\u30a4\u30eb\u3092\u3069\u3053\u306b\u3067\u3082\u81ea\u7531\u306b\u79fb\u52d5\u3055\u305b\u308b\u3053\u3068\u304c\u3067\u304d\u308b<\/strong>\u3068\u3044\u3063\u305f\u5229\u70b9\u3082\u3042\u308b\u3053\u3068\u304b\u3089\u3001\u30c7\u30d5\u30a9\u30eb\u30c8\u30d1\u30b9\u304cRmd\u30d5\u30a1\u30a4\u30eb\u304b\u3089\u306e\u76f8\u5bfe\u30d1\u30b9\u306b\u306a\u3063\u3066\u3044\u308b\u3088\u3046\u3067\u3059\u3002<\/p>\n\n\n\n<p>.Rproj 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\u3068\u540c\u3058\u968e\u5c64\u3067\u7ba1\u7406\u3092\u3059\u308b\u304b\u3001\u2461\u4e0a\u8a18\u306e\u30c7\u30a3\u30ec\u30af\u30c8\u30ea\u30d1\u30b9\u3092\u8a2d\u5b9a\u3059\u308b\u304b\u3001\u2462\u76f8\u5bfe\u30d1\u30b9\u306e\u307e\u307e\u4f5c\u696d\u3059\u308b\u304b\u30013\u629e\u306e\u4e2d\u304b\u3089\u9078\u629e\u3059\u308b\u3053\u3068\u306b\u306a\u308b\u3068\u601d\u3044\u307e\u3059\u304c\u3001\u81ea\u5206\u306e\u76ee\u7684\u306b\u3042\u3063\u305f\u4f7f\u3044\u65b9\u3067\u826f\u3044\u304b\u3068\u601d\u3063\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n<p>\u307e\u305f\u3001\u30d7\u30ed\u30b8\u30a7\u30af\u30c8\u3067\u7ba1\u7406\u3059\u308b\u5834\u5408\u306f\u3001GitHub\u3067\u9023\u643a\u3057\u306a\u304c\u3089\u30d0\u30fc\u30b8\u30e7\u30f3\u7ba1\u7406\u3059\u308b\u3053\u3068\u3092\u304a\u3059\u3059\u3081\u3057\u307e\u3059\u3002\u6700\u521d\u306e\u8a2d\u5b9a\u306f\u9762\u5012\u304b\u3082\u3057\u308c\u307e\u305b\u3093\u304c\u3001\u5c06\u6765\u3078\u306e\u81ea\u5206\u3078\u306e\u6295\u8cc7\u3068\u601d\u3063\u3066\u3057\u3066\u3044\u307e\u3059\u3002\u3053\u3061\u3089\u306e\u8a18\u4e8b\u3082\u3054\u53c2\u7167\u304f\u3060\u3055\u3044\u3002<\/p>\n\n\n\n<figure class=\"wp-block-embed-wordpress wp-block-embed is-type-wp-embed is-provider-shoei-05\"><div class=\"wp-block-embed__wrapper\">\nhttps:\/\/plaza.umin.ac.jp\/shoei05\/wp\/index.php\/2020\/10\/25\/165\/\n<\/div><\/figure>\n\n\n\n<h2 class=\"wp-block-heading\"><span class=\"ez-toc-section\" id=\"%E5%8F%82%E8%80%83\"><\/span>\u53c2\u8003<span class=\"ez-toc-section-end\"><\/span><\/h2>\n\n\n\n<ol class=\"wp-block-list\"><li>Riederer YX Christophe Dervieux, Emily. 16.6 The Working Directory for R Code Chunks | R Markdown Cookbook. Accessed November 1, 2020. <a href=\"https:\/\/bookdown.org\/yihui\/rmarkdown-cookbook\/working-directory.html\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/bookdown.org\/yihui\/rmarkdown-cookbook\/working-directory.html<\/a><\/li><li>r &#8211; Setting work directory in knitr using opts_chunk$set(root.dir = \u2026) doesn\u2019t work. Stack Overflow. Accessed November 1, 2020. <a href=\"https:\/\/stackoverflow.com\/questions\/30237310\/setting-work-directory-in-knitr-using-opts-chunksetroot-dir-doesnt-wor\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/stackoverflow.com\/questions\/30237310\/setting-work-directory-in-knitr-using-opts-chunksetroot-dir-doesnt-wor<\/a><\/li><\/ol>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Rmarkdown\u306e\u30c7\u30d5\u30a9\u30eb\u30c8\u30d1\u30b9\u306b\u3064\u3044\u3066 Rmarkdown (.Rmd)\u30d5\u30a1\u30a4\u30eb\u3092\u30b5\u30d6\u30c7\u30a3\u30ec\u30af\u30c8\u30ea\u3067\u7ba1\u7406\u3057\u3066\u3044\u308b\u3068\u3001\u5916\u90e8\u30d5\u30a1\u30a4\u30eb\u3078\u306e\u30d1\u30b9\u6307\u5b9a\u3067\u6238\u60d1\u3046\u3053\u3068\u304c\u3042\u308a\u307e\u3059\u3002\u30c7\u30d5\u30a9\u30eb\u30c8\u3067\u306f\u3001R\u30c1\u30e3\u30f3\u30af\uff08chunk\uff09\u306e\u4f5c\u696d\u30c7\u30a3\u30ec [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":717,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center 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