{"id":983,"date":"2023-10-11T12:53:15","date_gmt":"2023-10-11T03:53:15","guid":{"rendered":"https:\/\/plaza.umin.ac.jp\/prm\/?page_id=983"},"modified":"2024-04-16T13:00:59","modified_gmt":"2024-04-16T04:00:59","slug":"tool-dataset","status":"publish","type":"page","link":"https:\/\/plaza.umin.ac.jp\/prm\/tool-dataset\/","title":{"rendered":"\u30c4\u30fc\u30eb\u30fb\u30c7\u30fc\u30bf\u30bb\u30c3\u30c8"},"content":{"rendered":"

Dataset and Software<\/h2>\n

\u25a0Dataset<\/strong><\/p>\n

PLISM: Large-scale histological image dataset toward stain and device-agnostic models.<\/h5>\n

\"\"<\/p>\n

\n

Project page: https:\/\/p024eb.github.io\/<\/a>
\nPaper: https:\/\/www.nature.com\/articles\/s41597-024-03122-5<\/a><\/p>\n

\n

 <\/p>\n

SegPath\u00a0: The largest-scale datasets for the segmentation of cancer histology images<\/h5>\n

\"\"<\/p>\n

\n

Project page: https:\/\/dakomura.github.io\/SegPath\/<\/a>
\nPaper: https:\/\/www.cell.com\/patterns\/fulltext\/S2666-3899(23)00019-3<\/a><\/p>\n

\n

 <\/p>\n

Stomach Encyclopedia: Single-Cell and Spatial Transcriptome dataset of Human Stomach<\/h5>\n

\"\"<\/p>\n

\n

Dataset (CosMx):\u00a0https:\/\/zenodo.org\/records\/8333281<\/a><\/p>\n

Dataset (scRNAseq):https:\/\/data.humancellatlas.org\/explore\/projects\/cfece4d2-f18d-44ad-a46a-42bbcb5cb3b7<\/a><\/p>\n

Paper:\u00a0https:\/\/www.cell.com\/cell-reports\/fulltext\/S2211-1247(23)01248-2<\/a><\/p>\n

\n

 <\/p>\n

Histology images from uniform tumor regions in TCGA Whole Slide Images<\/h5>\n

\"\"<\/p>\n

\n

Dataset: https:\/\/zenodo.org\/record\/5889558<\/a>
\nPaper: https:\/\/www.sciencedirect.com\/science\/article\/pii\/S2211124722001486<\/a><\/p>\n

\n

\u00a0
\n\u25a0Software<\/strong><\/p>\n

Luigi: Large Scale HistoPathological Image Retrieval System<\/h5>\n

\"\"<\/p>\n

\n

Link: https:\/\/luigi-pathology.com\/<\/a>
\nPaper: https:\/\/www.sciencedirect.com\/science\/article\/pii\/S2211124722001486<\/a><\/p>\n

\n

 <\/p>\n

Luigi (iOS version)<\/h5>\n

\"\"<\/p>\n

\n

Link: https:\/\/apps.apple.com\/jp\/app\/luigi\/id1246638302<\/a>
\nPaper: https:\/\/www.sciencedirect.com\/science\/article\/pii\/S2211124722001486<\/a><\/p>\n

\n

 <\/p>\n

deeptexture: Tools for deep texture representation for histology images<\/h5>\n

\"\"<\/p>\n

\n

Github: https:\/\/github.com\/dakomura\/deep_texture_histology<\/a>
\nDocument: https:\/\/deep-texture-histology.readthedocs.io\/en\/latest\/<\/a>
\nPaper: https:\/\/star-protocols.cell.com\/protocols\/2546<\/a><\/p>\n

\n

 <\/p>\n

Viola: a structural variant signature extractor with user-defined classifications<\/h5>\n

\"\"<\/p>\n

\n

Github: https:\/\/github.com\/dermasugita\/Viola-SV<\/a>
\nDocument: https:\/\/viola-sv.readthedocs.io\/en\/1.0.x-stable-doc\/<\/a>
\nPaper: https:\/\/academic.oup.com\/bioinformatics\/article\/38\/2\/540\/6371863<\/a><\/p>\n

\n","protected":false},"excerpt":{"rendered":"

Dataset and Software \u25a0Dataset PLISM: Large-scale histological image datas …\u7d9a\u304d\u3092\u8aad\u3080<\/span><\/p>\n","protected":false},"author":1,"featured_media":17,"parent":0,"menu_order":970,"comment_status":"closed","ping_status":"closed","template":"tool-dataset.php","meta":{"footnotes":""},"class_list":["post-983","page","type-page","status-publish","has-post-thumbnail","hentry"],"aioseo_notices":[],"aioseo_head":"\n\t\t\n\t\n\t\n\t\n\t\t