Latest CNAG
Version 3.5.1
- Release date : 30 May 2013
- Supported array platforms : Affymetrix® - CytoScan® HD, Genome-Wide Human SNP Array 5.0/6.0, GeneChip® Human Mapping 500K Array and older
- OS : Windows 7/XP (Other version not tested)
- Download :
- [CNAG 3.5.1 installer (zipped)]
- [CNAG library files]
- [Affymetrix library files (Affymetrix website)]
- Please download zipped file for each array you will analyze, and find a library file named "*.cdf" in the folder.
- Setup :
- Download CNAG installer(CNAG.msi), CNAG library files and Affymetrix library files.
- Double click CNAG.msi to start the installation and follow the on-screen instructions.
- Extract CNAGLib_binary_uptohg19, then select "Parameter" > "Default setting" > "Folders(blue arrow)" > "CNAG library files" to set the file parameter.
- Set the "Affy Library files" parameter to the directory where Affymetrix library files (*.CDF) are located.
- Make new folders for "Array data files","Result files" and "Output files" and set the file parameters as mentioned above.
- NOTICE If the extension of the CHP file you want to analyze is ".cychp", which is generated by "Chas" software (Affymetrix),
please select the "cychp" in the pulldown list of
"Parameter" > "Default setting" > "Extra" > "CHP file extension",
before starting the analysis.
- Quick start guide (sorry! under construction!!):
- Bug report (Japanese): [Bug report]
old CNAG
Version 3.3.0.0-beta
IMPORTANT NOTICE : Please don’t open any result files made by older versions of CNAG using this version !!
[Release Notes]
[CNAG 3.3.0 beta]
Version 3.0
Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide-polymorphism genotyping microarrays.
Am J Hum Genet. 2007 Jul;81(1):114-26. [Pubmed]
Analysis of FFPE DNA Data in CNAG 2.0
Genome-wide, high-resolution detection of copy number, loss of heterozygosity, and genotypes from formalin-fixed, paraffin-embedded tumor tissue using microarrays
Cancer Res. 2007 Mar 15;67(6):2544-51.[Pubmed]
Version 2.0
IMPORTANT NOTICE : If you have installed the older version, please uninstall the older version before you install this version.
[CNAG 2.0]
[manual (pdf)]