{"id":587,"date":"2024-06-10T07:50:04","date_gmt":"2024-06-10T07:50:04","guid":{"rendered":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/wpsite\/?page_id=587"},"modified":"2024-06-12T07:15:06","modified_gmt":"2024-06-12T07:15:06","slug":"publications","status":"publish","type":"page","link":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/en\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"
Vulnerability of short-term memory in a mouse model of Alzheimer\u2019s disease<\/a><\/h5>
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Chunyue Li, Xin Wei Chia, Guozhong Xu, Lee Fang Ang & Hiroshi Makino
Nature Communications<\/em><\/strong>\uff082026\uff09
https:\/\/doi.org\/10.1038\/s41467-026-69619-2<\/a>
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Isotonic and minimally invasive optical clearing media for live cell imaging ex vivo and in vivo<\/a><\/h5>
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Shigenori Inagaki, Nao Nakagawa-Tamagawa, Nathan Zechen Huynh, Yuki Kambe, Rei Yagasaki, Satoshi Manita, Satoshi Fujimoto, Takahiro Noda, Misato Mori, Aki Teranishi, Hikari Takeshima, Koki Ishikawa, Yuki Naitou, Tatsushi Yokoyama, Masayuki Sakamoto, Katsuhiko Hayashi, Kazuo Kitamura, Yoshiaki Tagawa, Satoru Okuda, Tatsuo K. Sato & Takeshi Imai
Nature Methods<\/em><\/strong>\uff082026\uff09
https:\/\/doi.org\/10.1038\/s41592-026-03023-y<\/a><\/p>\n\n\n\n

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YORU: Animal behavior detection with object-based approach for real-time closed-loop feedback<\/a><\/h5>
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Hayato M. Yamanouchi, Ryosuke F. Takeuchi, Naoya Chiba, Koichi Hashimoto, Takashi Shimizu, Fumitaka Osakada, Ryoya Tanaka, and Azusa Kamikouchi
Science Advances<\/em><\/strong>\uff082026\uff09
https:\/\/www.science.org\/doi\/10.1126\/sciadv.adw2109<\/a><\/p>\n\n\n\n

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Single-cell resolution functional networks during unconsciousness are segregated into spatially intermixed modules<\/a><\/h5>
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Daiki\u00a0Kiyooka,\u00a0Ikumi\u00a0Oomoto,\u00a0Jun\u00a0Kitazono,\u00a0Yoshihito\u00a0Saito,\u00a0Midori\u00a0Kobayashi,\u00a0Chie\u00a0Matsubara,\u00a0Kenta\u00a0Kobayashi,\u00a0Masanori\u00a0Murayama, Masafumi\u00a0Oizumi
Cell Reports<\/em><\/strong>\uff082026\uff09
https:\/\/doi.org\/10.1016\/j.celrep.2025.116902<\/a>
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Neural substrate of conditioned stimulus for associative learning in the hippocampus<\/a><\/h5>
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Kyogo S. Kobayashi , Ren Sogabe, Tsuyoshi Tatsukawa , and Naoki Matsuo
Proc Natl Acad Sci USA<\/em><\/strong>\uff082026\uff09
https:\/\/www.pnas.org\/doi\/10.1073\/pnas.2519161123<\/a><\/p>\n\n\n\n

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Dendritic compartment-specific spine formation in layer 5 neurons underlies cortical circuit maturation during adolescence<\/a><\/h5>
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Ryo Egashira, Meng-Tsen Ke, Nao Nakagawa-Tamagawa, Satoshi Fujimoto, Shigenori Inagaki, Tsuyoshi Takagi, Tsuyoshi Miyakawa, Yoshiaki Tagawa, and Takeshi Imai
Science Advances<\/em><\/strong>\uff082026\uff09
https:\/\/www.science.org\/doi\/10.1126\/sciadv.adw8458<\/a><\/p>\n\n\n\n


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A simple method that doubles learning speed for mice in touchscreen-based visual discrimination<\/a><\/h5>
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Yuji Kiyama, Yusuke Suzuki, Misako Haraguchi, Yukimura Oe, Yukihisa Daitoku, Natsumi Higa, Yoshihiko Irie, Takeru Suzuki, Itaru Imayoshi, Masaki Kakeyama & Hiroyuki Okuno
Scientific Reports<\/em><\/strong>\uff082025\uff09
https:\/\/doi.org\/10.1038\/s41598-025-27003-y<\/a><\/p>\n\n\n\n

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Decoupling of visual feature selectivity in the retinocollicular pathway<\/a><\/h5>
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Ole S. Schwartz, Akihiro Matsumoto, Haruka Yamamoto, and Keisuke Yonehara
Current Biology<\/em><\/strong>\uff082025\uff09
<\/strong>https:\/\/doi.org\/10.1016\/j.cub.2025.11.050<\/a><\/p>\n\n\n\n

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Single-cell synaptome mapping of endogenous protein subpopulations in mammalian brain<\/a><\/h5>
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Motokazu Uchigashima, Risa Iguchi, Kazuma Fujii, Kaito Shiku, Pratik Kumar, Xinyi Liu, Mari Isogai, Chiaki Hoshino, Manabu Abe, Motohiro Nozumi, Yosuke Okamura, Michihiro Igarashi, Kenji Sakimura, Ryoma Bise, Luke D. Lavis & Takayasu Mikuni
Nature Communications\uff082025\uff09<\/em><\/strong>
https:\/\/doi.org\/10.1038\/s41467-025-65813-w<\/a><\/p>\n\n\n\n

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Neuronal migration depends on blood flow in the adult mammalian brain<\/a><\/h5>
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Takashi Ogino, Akari Saito, Masato Sawada, Shoko Takemura, Yuzuki Hara, Kanami Yoshimura, Jiro Nagase, Honomi Kawase, Takamasa Sato, Hiroyuki Inada, Vicente Herranz-P\u00e9rez, Yoh-suke Mukouyama, Masatsugu Ema, Jos\u00e9 Manuel Garc\u00eda-Verdugo, Junichi Nabekura, Kazunobu Sawamoto
eLife\uff082025\uff09<\/em><\/strong>
https:\/\/doi.org\/10.7554\/eLife.99502.3<\/a><\/p>\n\n\n\n

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Artificially induced torpor during pregnancy impairs fetal growth in mice<\/a><\/h5>
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Mitsue Hagihara, Takeshi Sakurai, Kazunari Miyamichi, Kengo Inada
Scientific Reports<\/em><\/strong>\uff082025\uff09
https:\/\/doi.org\/10.1038\/s41598-025-21115-1<\/a><\/p>\n\n\n\n

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DNA polymerase \u03b2 suppresses somatic indels at CpG dinucleotides in developing cortical neurons<\/a><\/h5>
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Noriyuki Sugo, Arikuni Uchimura, Risa Matsumoto, Hiro Nakayama, Shota Fujimoto, Saya Mizuno, Mayumi Higuchi, Masaaki Toshishige, Yasunari Satoh, Sayaka Wakayama, Teruhiko Wakayama, Takeshi Yagi
Proc Natl Acad Sci U S A<\/em><\/strong>\uff082025\uff09
https:\/\/www.pnas.org\/doi\/10.1073\/pnas.2506846122<\/a><\/p>\n\n\n\n

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Cross-species implementation of an innate courtship behavior by manipulation of the sex-determinant gene<\/a><\/h5>
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Ryoya Tanaka, Yusuke Hara, Kosei Sato, Soh Kohatsu, Hinata Murakami, Tomohiro Higuchi, Takeshi Awasaki, Shu Kondo, Atsushi Toyoda, Azusa Kamikouchi, Daisuke Yamamoto
Science<\/em><\/strong>\u00a0\u00a0(2025)
https:\/\/www.science.org\/doi\/10.1126\/science.adp5831<\/a><\/p>\n\n\n\n

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Inducible NMDA receptor knockdown reveals a maintenance phase in dendritic refinement of barrel cortex neurons<\/a><\/h5>
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Ayane Nihashi, Naoki Nakagawa, Takuya Sato, Mariko Yamamoto, Luwei Wang, Rieko Ajima, Yumiko Saga, Yumiko Yoshimura, Masato T. Kanemaki, Takuji Iwasato
iScience<\/em><\/strong>\uff082025\uff09
https:\/\/doi.org\/10.1016\/j.isci.2025.113229<\/a><\/p>\n\n\n\n

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Transformation of radial glia into postnatal neural stem cells depends on birth<\/a><\/h5>
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Shoko Takemura, Koya Kawase, Laura Wolbeck, Yasuhisa Nakamura, Mami Matsumoto, Hideo Jinnou, Aika Tahara, Masato Sawada, Yoshiaki Kubota, Vicente Herranz-P\u00e9rez, Jos\u00e9 Manuel Garc\u00eda-Verdugo, Nobuyuki Ishibashi, Vittorio Gallo, Nobuhiko Ohno, Konstantin Khodosevich, Kazunobu Sawamoto
Cell Reports<\/em><\/strong>\u00a0\u00a0(2025)
https:\/\/doi.org\/10.1016\/j.celrep.2025.116029<\/a>
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SeeThrough: a rationally designed skull clearing technique for in vivo brain imaging<\/a><\/h5>
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Liu X, Uchigashima M, Oomoto I, Saito Y, Uchida H, Oginezawa S, Masuda K, Satoh D, Abe M, Sakimura K, Shimizu Y, Murayama M, Tainaka K, Mikuni T.<\/p>\n\n\n\n

Nature Communications<\/em><\/strong> (2025)<\/p>\n\n\n\n

https:\/\/doi.org\/10.1038\/s41467-025-62836-1<\/a><\/p>\n\n\n\n

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Mating status-dependent dopaminergic modulation of auditory sensory neurons in Drosophila<\/a><\/h5>
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Haruna Yamakoshi, Mihoko Horigome, Shotaro Yamamoto, Shoya Iwanami, Shingo Iwami, Ryoya Tanaka, Yuki Ishikawa, Azusa Kamikouchi
iScience<\/em><\/strong>\u00a0\u00a0(2025)
https:\/\/doi.org\/10.1016\/j.isci.2025.113232<\/a><\/p>\n\n\n\n

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Functionally distinct GABAergic amacrine cell types regulate spatiotemporal encoding in the mouse retina<\/a><\/h5>
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Matsumoto A, Morris J, Looger LL, Yonehara K <\/p>\n\n\n\n

Nature Neuroscience<\/em><\/strong> (2025) <\/p>\n\n\n\n

https:\/\/doi.org\/10.1038\/s41593-025-01935-0<\/a><\/p>\n<\/div>\n\n\n\n

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Multiphasic protein condensation governed by shape and valency<\/a><\/h5>
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Vikas Pandey, Tomohisa Hosokawa, Yasunori Hayashi, Hidetoshi Urakubo
Cell Reports<\/em><\/strong>\u00a0\u00a0(2025)
https:\/\/doi.org\/10.1016\/j.celrep.2025.115504<\/a><\/p>\n<\/div><\/div><\/div>

Amygdalo-cortical dialogue underlies memory enhancement by emotional association<\/a><\/h5>
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Yoshihito Saito, Yuma Osako, Maya Odagawa, Yasuhiro Oisi, Chie Matsubara, Shigeki Kato, Kazuto Kobayashi, Mitsuhiro Morita, Joshua P. Johansen, Masanori Murayama
Neuron<\/em><\/strong>\u00a0\u00a0(2025)
https:\/\/doi.org\/10.1016\/j.neuron.2025.01.001<\/a><\/p>\n<\/div><\/div><\/div>

Automated neuronal reconstruction with super-multicolour Tetbow labelling and threshold-based clustering of colour hues<\/a><\/h5>
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Leiwe MN, Fujimoto S, Baba T, Moriyasu D, Saha B, Sakaguchi R, Inagaki S, Imai T<\/span>.
Nat Commun<\/em><\/strong>\u00a015, 5279\u00a0(2024)
https:\/\/doi.org\/10.1038\/s41467-024-49455-y<\/a>
bioRxiv preprint: https:\/\/www.biorxiv.org\/content\/10.1101\/2022.10.20.512984v1<\/a><\/p>\n<\/div>PubMed<\/a>

[Original microscopy images (SSBD Repository<\/a>)], [Post-hoc chromatic aberration correction codes (GitHub<\/a>)],\u00a0[Linearity correction program for Leica HyD (GitHub<\/a>)],\u00a0[ImageJ plugin for Linear Unmixing (GitHub<\/a>)],\u00a0[dCrawler (MATLAB and Python) (GitHub<\/a>)],\u00a0[QDyeFinder (GitHub<\/a>)],\u00a0[SWC exporter for Imaris Filament Tracer (GitHub<\/a>)]<\/div><\/div><\/div><\/div>","protected":false},"excerpt":{"rendered":"","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"_locale":"en_US","_original_post":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/wpsite\/?page_id=133","footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-587","page","type-page","status-publish","hentry","en-US"],"acf":[],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/wp-json\/wp\/v2\/pages\/587","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/wp-json\/wp\/v2\/comments?post=587"}],"version-history":[{"count":2,"href":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/wp-json\/wp\/v2\/pages\/587\/revisions"}],"predecessor-version":[{"id":664,"href":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/wp-json\/wp\/v2\/pages\/587\/revisions\/664"}],"wp:attachment":[{"href":"https:\/\/plaza.umin.ac.jp\/dynamic-brain\/wp-json\/wp\/v2\/media?parent=587"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}